BINF001 - ECTS

BINF002 - ECTS

BINF035 - ECTS At the end of the course is intended that students have the skill to: a) Understand the principles of classification and diversity of living organisms. b) Give details of structural and functional aspects of cellular biology. c) Identify the basic principles of metabolism in plant and in animal cells. d) Understand the fundamentals of the control of cell division e) Understand the fundamentals of heredity f) Acquire abilities of optical microscopy techniques and spectrophotometry g) Acquire abilities to perform colouration techniques, namely GRAM colouration h) Acquire abilities to identify aspects of Biodiversity at the local, regional and national level i) Acquire abilities to distinguish elements of diversity associated with different taxonomic kingdoms

BINF005 - ECTS

This curricular unit is designed primarily to provide to the student an overview of boinformátics as an interdisciplinary science that allows the storage and analysis of large volumes of biological information, involving biochemists, biologists, mathematicians and experts in the latest informatic techniques applied to Biological and Chemical sciences. In addition, it is intended with this curricular unit to introduce the student to several fields of action and application of bioinformatics.

BINF031 - ECTS The curricular unit “Programming Applied to Bioinformatics” aims to convey the notion of algorithms as the formalization of a solution to a well-defined problem in a sequence of elementary actions. At the end, the student should be able to: analyze a given algorithm and predict the final result of its execution; design algorithms in natural language and pseudo-code; Understand and know: computer programming as a way of describing algorithms in a formal language that can be executed on a general-purpose computer; elementary principles of programming: variables; decision instructions; cycle instructions; lists and arrays; the traditional computer program development cycle: design, programming and testing. Apply knowledge of these basic principles to an appropriate programming language; be able to translate a given algorithm into a complete program; be able to solve a given problem by designing, programming and testing it.

BINF006 - ECTS After this course it is expected that the student will know and understand the fundaments of general chemistry. The student should be able to recognize the atomic structure and chemical bonds, basic foundations of chemistry, with the aim of understanding the structure of matter and its transformations, as well as understand and to know how to implement qualitative and quantitative chemical analysis, distinguishing between the different chemical equilibrium. Understand the acid-base equilibrium, knowing how to use buffer solutions, titrations and acid-base volumetry. Although the essentially introductory character of this UC, it is intended that students acquire skills allowing them a better adaptation and understanding of problems involved in chemical processes in the subsequent UC, essential to access profession as professionals in Biotechnology in general and particularly in the pharmaceutical, agrochemical, food and biochemistry, or related fields, and in public services

BINF007 - ECTS

BINF008 - ECTS

The student should be able to design, conceive and implement 
databases using the relational database model. 
Concepts, various models and existing database systems are 
presented. It is intended that the student acquire the ability 
to describe the architecture of a Database Management System 
and use a database construction tool with this approach. 
In this context, it should understand the transactional 
operation, the mechanisms of competition, security and 
fault tolerance and authorization/authentication in a DBMS.

It is also objective for the student to acquire skills in 
analyzing and extracting information from the database. 
Data definition and data manipulation languages ​​will be 
presented.

For the practical component, among the available tools, 
a reference client/server architecture database on the 
market will be used.

BINF009 - ECTS The objective of this curricular unit is to increase the knowledge about the basic functional unit of all living beings – the cell, in terms of its composition, dynamic and functioning.

BINF004 - ECTS

Learning objectives (knowledge, skills, and competencies to be developed by students):

• Acquisition of theoretical and practical knowledge fundamental to the understanding of IS and its role in organizations, particularly in the health area;
• Acquisition of core knowledge in domains associated with IS (Information Management, Architecture, Project Management, Auditing, Ethics);
• Ability to identify solutions to specific problems in the IS framework from organizational reading;
• Identify some of the main methods, tools, and solutions within the IS;
• Identification of the importance of IS design, management and control activities in an organizational context;
• Ability to critically reflect on issues related to the fundamentals of IS;
• The framework of the role and role of the Information Systems Manager.

BINF010 - ECTS

BINF012 - ECTS

The objectives for students are: to become familiar with formulas, structures, nomenclature and concepts in the field of organic chemistry; to recognize the importance of a given molecule, the role and distribution of electrons that can intervene in organic reactions; to classify the reactions of organic compounds; to understand the chemical reactions and justify mechanistically these reactions. Apply the knowledge of the reactivity of different functional groups in order to obtain new compounds; to acquire the concept of geometry of molecules in space associated with the study of stereochemistry.

It is intended that students acquire skills to access profession as chemical engineering professionals in the chemical or biological in general and, in particular, in the pharmaceutical, agrochemical, food and biochemistry, or related fields, and in public services.

BINF013 - ECTS

BINF014 - ECTS The objective of this curricular unit is the knowledge and understanding of the properties and structure of the foremost classes of biomolecules (sugars, lipids, proteins and nucleic acids), their interactions with the solvent water, and the mechanisms by which they react in a controlled manner in the context of the living cell.

BINF015 - ECTS In this curricular unit, the student should be able to characterize the architecture and distinguish the different models of a Data Warehouse, approaching the dimensional model of Ralph Kimball and the business model of W. H. Inmon.

It is intended that the student master the Data Warehouse components, and be able to plan and execute the development cycle of a Data Warehouse. The student should be able to master the analysis and design of the ETL process and have knowledge of OLAP interrogation tools.

The student should develop practical skills in the development of data warehouses based on the star schema and the ability to build MDX expressions, using Microsoft SQL Server Data Tools or the Oracle Exadata Intelligent Warehouse solution.

BINF016 - ECTS This Unit/Subject will expand some of the themes introduced in the Unit/Subject "General Chemistry". Chemical bond and intermolecular forces will be explored/studied as an extension of the atom properties. An introduction to thermodinamics is also included. Absorption spectroscopies will be presented in close relation to the structural characteristics that they enlighten; mass spectrometry and nuclear magnetic resonance are shown as structural analytical tools.

BINF017 - ECTS

This curricular unit is designed primarily to provide students with an integrated view of the structure and function of genomes, taking into account their methods of sequencing, annotation and analysis. In addition, at the end of the semester it is expected that students know the latest methods of genetic analysis at the RNA level and protein expression, in addition to understand the functioning of cells in an integrated and comprehensive manner.

BINF032 - ECTS This course has as main objectives to provide the student with a global vision of the object-oriented programming paradigm. At the end of the course unit the learner is expected to be able to - Identify and apply the fundamentals of the Object-Oriented Programming (OOP) paradigm. - Analyse problems and design solutions for those problems using the object-oriented paradigm - Build common software applications using an object-oriented programming language. - Design and implement solutions through teamwork

BINF019 - ECTS The purpose of this course is to introduce the basic principles biological sequences analysis, based on the concept of sequence (DNA, RNA and proteins), associated with the structure of biomolecules, to promotethe understanding of the applications of the various algorithms and to give the skills required to choose the most appropriate techniques and interpret the results obtained. The most common methods will bediscussed, as students should be able to understand and transcribe them into code, and the various tools available for analysis and treatment sequences will be studied in detail, so that students master them properly.

BINF020 - ECTS

BINF033 - ECTS

Bioethics
(OA.1) Understand the bioethical approach and the relevance of the relationship between science, ethics and society.
(OA.2) Framing biotechnological issues in an ethical approach.
(OA.3) Discuss cases and themes, properly applying bioethical thinking, prevailing theories and argumentative models to the assessment of concrete situations
Information security
(OA.4) Identify the main risks and threats in Cyberspace and the need for Information Security to find structured responses to them.
(OA.5) Understand and know how to apply the main concepts underlying Information Security, its limitations and interrelationships.
(OA.6) Understand and the main concepts related to the risk of information assets in organizations and develop analysis capabilities materialized through various elements, such as strategies, architectures, policies, standards and procedures, etc.

BINF022 - ECTS

• Understand the main concepts related with Business Intelligence, namely DataWarehouse, ETL and Reporting Tools and the technological infrastructure;
• Understand the importance of Business Analytics as a practice of iterative data exploration, to enable the decision making.
• Understand the importance of Data Mining in organizations
• Knowledge Discover in Databases through Data Mining techniques;
• Understand the main concepts, methodologies and Data Mining techniques.

BINF027 - ECTS

. Acquire a conceptual, deep and specialized 
knowledge about Entrepreneurship.

. Critically understand the theories and principles
 of Entrepreneurship.

. Conceive creative solutions and innovate both in
 the context of creating new companies and in existing
 companies.

. Solve complex and unpredictable problems related to
 business environments.

. Apply strategic planning tools for the creation
 and development of new businesses.

. Develop business plans for business creation.

. Take responsibility for individual and collective 
development as an entrepreneur on their own or for others.

. Develop autonomy with regard to decision making and 
problem solving in the context of creating the company 
itself or existing companies in a proactive, innovative 
way, generating sustainable value.

BINF024 - ECTS

BINF025 - ECTS

BINF026 - ECTS skills, focusing on structure modelling, protein modelling and protein interactions. Students will learn the validity
and applicability of molecular dynamics methods applied to biomolecular problemas – proteins, nucleic acid, and membranes.

Using the contents of this curricular unit students will be able to:
-Choose the appropriate technique to model problems relating to structural;
-Set-up and run the necessary calculations;
-Use the existing analysis tools or write their own, using the programming skills from previous UCs.

Students will learn the fundamental skills of structure simulation, with some exercise classes focused on learning
the details.

BINF028 - ECTS This UC is organized so that students use all the knowledge and skills from previous UCs and develop their own projects, in a computational environment, with a high degree of autonomy and under the necessary supervision. The structural simulation skills from “Bioquímica Computacional” UC and the mathematical modelling skills from “Metabolismo e Regulação” and “Modelação de Processos Biológicos” UCs are the key skills the students will develop; various other UCs of the biotechnology and informatics will also be used.

BINF029 - ECTS The goal of this UC is to provide knowledge about mathematical modeling used to simulate biological/biochemical systems from a kinetic and metabolic perspective. This mathematical interpretation stems from the systems biology, in which systems can be modeled through the use of differential equations encompassing not only kinetics and flows, but also regulation processes and compartmentalization. This UC also includes pharmacokinetic application models, which were introduced at the UC “Metabolism and Regulation”. Skills developed by students includes the bio-mathematical analysis of biological systems using computational tools and databases in the area of systems biology.

BINF034 - ECTS

The degree in Bioinformatics results from the joint efforts of 4 IPS schools. Thus, it makes sense that in the

curricular plan exists one unit with multidisciplinary character, aggregating different knowledge. The UC with 5

ECTS, occurs in the 5th semester with both TP and tutorial (OT) components, being implemented through a tutoring

system that monitors and supports the student's pathway.

The general objective is to allow the student to build a specific learning pathway, ensuring the formal recognition of

learning and skills acquired in different contexts and situations - scientific, academic, professional and social –

ensuing its recognization as significant, relevant and in the scope of the desired competencies for the graduates.

These activities can be carried out throughout the course (extracurricular internships or participation in research

projects or others of the IPS) or be structured only in this 5th semester.

BINF030 - ECTS The main objective of this curricular unit is to get the student to solve a new problem, corresponding to a new situation in a working context, in an internship or as a project, based on the skills and knowledge acquired during the course in Bioinformatics.